Steward Health Care System, which ­includes struggling Carney Hospital, will not qualify for millions of dollars in special payments under the new Massachusetts health care law, because legislators said they did not want to subsidize a for-profit company. The provision is one of several buried in the 350-page bill that penalize or benefit certain hospitals.

The cost-control law also targets three Harvard-­affiliated hospital systems — Partners HealthCare, Boston Children’s Hospital, and Beth Israel Deaconess Medical Center — to pay a one-time $60 million tax to fund health programs.